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    LINC00158 long intergenic non-protein coding RNA 158 [ Homo sapiens (human) ]

    Gene ID: 54072, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC00158provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 158provided by HGNC
    Primary source
    HGNC:HGNC:1283
    See related
    Ensembl:ENSG00000185433 AllianceGenome:HGNC:1283
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C21orf42; NCRNA00158
    Expression
    Biased expression in testis (RPKM 2.2), prostate (RPKM 0.3) and 2 other tissues See more
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    Genomic context

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    See LINC00158 in Genome Data Viewer
    Location:
    21q21.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (25385820..25431701, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (23743681..23789568, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (26758133..26804013, complement)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 489 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18303 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr21:26701419-26702618 Neighboring gene ribosomal protein L13a pseudogene 7 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18304 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:26807918-26808082 Neighboring gene uncharacterized LOC105372753 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr21:26829184-26830383 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13224 Neighboring gene cytochrome P450 family 2 subfamily C member 63, pseudogene Neighboring gene uncharacterized LOC124905059

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. From PREDs and open reading frames to cDNA isolation: revisiting the human chromosome 21 transcription map. Reymond A, et al. Genomics, 2001 Nov. PMID 11707072
    2. The DNA sequence of human chromosome 21. Hattori M, et al. Nature, 2000 May 18. PMID 10830953

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024027.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA437209, AP000220, AY035383
      Related
      ENST00000332587.8

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      25385820..25431701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      23743681..23789568 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_058184.1: Suppressed sequence

      Description
      NM_058184.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P58513.1 GenPept UniProtKB/Swiss-Prot:P58513

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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