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    CIMG_04544 alpha-amylase AmyA [ Coccidioides immitis RS ]

    Gene ID: 4564978, updated on 31-Oct-2024

    Summary

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    Gene symbol
    CIMG_04544
    Gene description
    alpha-amylase AmyA
    Locus tag
    CIMG_04544
    See related
    FungiDB:CIMG_04544; VEuPathDB:CIMG_04544
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Coccidioides immitis RS (strain: RS)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Onygenaceae; Coccidioides
    Orthologs
    Aspergillus fumigatus all
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    Genomic context

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    See CIMG_04544 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_004504311.1Genomic Context describing neighboring genes Neighboring gene glycosyl hydrolase Neighboring gene RNA-binding protein 8A Neighboring gene bax Inhibitor family protein Neighboring gene protein CGI121 Neighboring gene structure-specific endonuclease subunit SLX4 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004504311.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-amylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-amylase AmyA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_004504311.1 Reference assembly

      Range
      787018..789794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001245102.2 → XP_001245103.2  alpha-amylase AmyA [Coccidioides immitis RS]

      See identical proteins and their annotated locations for XP_001245103.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0J6YCS8, A0A0J8UN86, J3KDQ5
      Conserved Domains (3) summary
      cd11319
      Location:28 → 402
      AmyAc_euk_AmyA; Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
      pfam00128
      Location:67 → 370
      Alpha-amylase; Alpha amylase, catalytic domain
      pfam09260
      Location:425 → 503
      DUF1966; Domain of unknown function (DUF1966)
    Nucleotide Protein
    Heading Accession and Version

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