U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    dcn.L decorin L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 447482, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    dcn.L
    Official Full Name
    decorin L homeolog
    Primary source
    Xenbase:XB-GENE-864959
    Locus tag
    XELAEV_18017465mg
    See related
    EnsemblRapid:ENSXLAG00005005474
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    dcn; cscd; pg40; pgii; pgs2; dspg2; slrr1b
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See dcn.L in Genome Data Viewer
    Location:
    chromosome: 3L
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (62475118..62507693, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (48010751..48043469, complement)

    Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene keratocan L homeolog Neighboring gene lumican L homeolog Neighboring gene parietopsin L homeolog Neighboring gene uncharacterized LOC121401168

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC81824

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    decorin L homeolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001094189.1 → NP_001087658.1  decorin L homeolog precursor

      See identical proteins and their annotated locations for NP_001087658.1

      Status: PROVISIONAL

      Source sequence(s)
      BC081050
      UniProtKB/TrEMBL
      A0A974DBK1, Q66J59
      Related
      ENSXLAP00005016143.1, ENSXLAT00005016431.1
      Conserved Domains (3) summary
      PRK15370
      Location:75 → 303
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      smart00013
      Location:58 → 90
      LRRNT; Leucine rich repeat N-terminal domain
      sd00033
      Location:67 → 87
      LRR_RI; leucine-rich repeat [structural motif]

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      62475118..62507693 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018251082.2 → XP_018106571.1  decorin L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A974DBK1, Q66J59
      Conserved Domains (3) summary
      PRK15370
      Location:75 → 303
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      smart00013
      Location:58 → 90
      LRRNT; Leucine rich repeat N-terminal domain
      sd00033
      Location:67 → 87
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_041585173.1 → XP_041441107.1  decorin L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A974DBK1, Q66J59
      Conserved Domains (3) summary
      PRK15370
      Location:75 → 303
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      smart00013
      Location:58 → 90
      LRRNT; Leucine rich repeat N-terminal domain
      sd00033
      Location:67 → 87
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.