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    rpl6.S ribosomal protein L6 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 444819, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rpl6.S
    Official Full Name
    ribosomal protein L6 S homeolog
    Primary source
    Xenbase:XB-GENE-958287
    Locus tag
    XELAEV_18010675mg
    See related
    EnsemblRapid:ENSXLAG00005008047
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    rpl6
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    Genomic context

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    See rpl6.S in Genome Data Viewer
    Location:
    chromosome: 1S
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (151994702..152002914, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (136221283..136229522, complement)

    Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene TRAF-type zinc finger domain containing 1 S homeolog Neighboring gene HECT domain containing E3 ubiquitin protein ligase 4 S homeolog Neighboring gene protein tyrosine phosphatase, non-receptor type 11 S homeolog Neighboring gene rabphilin 3A S homeolog Neighboring gene WSC domain containing 2 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The termination of UHRF1-dependent PAF15 ubiquitin signaling is regulated by USP7 and ATAD5. Miyashita R, et al. Elife, 2023 Feb 3. PMID 36734974, Free PMC Article
    2. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
    3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • MGC84358

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within ribosomal large subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal protein L6 S homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001092921.1 → NP_001086390.1  ribosomal protein L6 S homeolog

      See identical proteins and their annotated locations for NP_001086390.1

      Status: PROVISIONAL

      Source sequence(s)
      BC075222
      UniProtKB/TrEMBL
      A0A974DUY4, A0A974DX62, Q6DJF7
      Conserved Domains (2) summary
      cd13156
      Location:106 → 258
      KOW_RPL6; KOW motif of Ribosomal Protein L6
      pfam03868
      Location:8 → 65
      Ribosomal_L6e_N; Ribosomal protein L6, N-terminal domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      151994702..152002914 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041575480.1 → XP_041431414.1  ribosomal protein L6 S homeolog isoform X4

      UniProtKB/TrEMBL
      A0A974DUY4, A0A974DX62, Q6DJF7
      Conserved Domains (2) summary
      cd13156
      Location:106 → 258
      KOW_RPL6; KOW motif of Ribosomal Protein L6
      pfam03868
      Location:8 → 65
      Ribosomal_L6e_N; Ribosomal protein L6, N-terminal domain

    2. XM_041575484.1 → XP_041431418.1  ribosomal protein L6 S homeolog isoform X4

      UniProtKB/TrEMBL
      A0A974DUY4, A0A974DX62, Q6DJF7
      Conserved Domains (2) summary
      cd13156
      Location:106 → 258
      KOW_RPL6; KOW motif of Ribosomal Protein L6
      pfam03868
      Location:8 → 65
      Ribosomal_L6e_N; Ribosomal protein L6, N-terminal domain

    3. XM_018237248.2 → XP_018092737.1  ribosomal protein L6 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0TXA4, A0A974DX62

    4. XM_018237265.1 → XP_018092754.1  ribosomal protein L6 S homeolog isoform X4

      UniProtKB/TrEMBL
      A0A974DUY4, A0A974DX62, Q6DJF7
      Related
      ENSXLAP00005023093.1, ENSXLAT00005023798.1
      Conserved Domains (2) summary
      cd13156
      Location:106 → 258
      KOW_RPL6; KOW motif of Ribosomal Protein L6
      pfam03868
      Location:8 → 65
      Ribosomal_L6e_N; Ribosomal protein L6, N-terminal domain

    5. XM_018237260.2 → XP_018092749.1  ribosomal protein L6 S homeolog isoform X3

      UniProtKB/TrEMBL
      A0A8J0U088, A0A974DX62
      Related
      ENSXLAP00005023108.1, ENSXLAT00005023813.1

    6. XM_041575488.1 → XP_041431422.1  ribosomal protein L6 S homeolog isoform X4

      UniProtKB/TrEMBL
      A0A974DUY4, A0A974DX62, Q6DJF7
      Conserved Domains (2) summary
      cd13156
      Location:106 → 258
      KOW_RPL6; KOW motif of Ribosomal Protein L6
      pfam03868
      Location:8 → 65
      Ribosomal_L6e_N; Ribosomal protein L6, N-terminal domain

    7. XM_041575474.1 → XP_041431408.1  ribosomal protein L6 S homeolog isoform X4

      UniProtKB/TrEMBL
      A0A974DUY4, A0A974DX62, Q6DJF7
      Related
      ENSXLAP00005023064.1, ENSXLAT00005023769.1
      Conserved Domains (2) summary
      cd13156
      Location:106 → 258
      KOW_RPL6; KOW motif of Ribosomal Protein L6
      pfam03868
      Location:8 → 65
      Ribosomal_L6e_N; Ribosomal protein L6, N-terminal domain

    8. XM_018237255.1 → XP_018092744.1  ribosomal protein L6 S homeolog isoform X2

      UniProtKB/TrEMBL
      A0A8J0TXB0, A0A974DX62

    9. XM_041575485.1 → XP_041431419.1  ribosomal protein L6 S homeolog isoform X4

      UniProtKB/TrEMBL
      A0A974DUY4, A0A974DX62, Q6DJF7
      Conserved Domains (2) summary
      cd13156
      Location:106 → 258
      KOW_RPL6; KOW motif of Ribosomal Protein L6
      pfam03868
      Location:8 → 65
      Ribosomal_L6e_N; Ribosomal protein L6, N-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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