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    cenps.L centromere protein S L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 431958, updated on 18-Sep-2024

    Summary

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    Official Symbol
    cenps.L
    Official Full Name
    centromere protein S L homeolog
    Primary source
    Xenbase:XB-GENE-5938577
    Locus tag
    XELAEV_18035182mg
    See related
    EnsemblRapid:ENSXLAG00005034335
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    mhf1; cenps; apitd1; apitd1.L
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    Genomic context

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    See cenps.L in Genome Data Viewer
    Location:
    chromosome: 7L
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (66577058..66616987)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (58122602..58141083)

    Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 1B L homeolog Neighboring gene phosphogluconate dehydrogenase L homeolog Neighboring gene DNA fragmentation factor, 45kDa, alpha polypeptide L homeolog Neighboring gene peroxisomal biogenesis factor 14 L homeolog Neighboring gene castor zinc finger 1 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC83786

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables chromatin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    contributes_to double-stranded DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within DNA repair ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within cell division IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within replication fork processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within replication fork processing ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within resolution of meiotic recombination intermediates IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within resolution of meiotic recombination intermediates ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of FANCM-MHF complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of FANCM-MHF complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    part_of Fanconi anaemia nuclear complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    centromere protein S
    Names
    CENP-S
    FANCM-interacting histone fold protein 1
    apoptosis-inducing TAF9-like domain-containing protein 1 homolog
    apoptosis-inducing, TAF9-like domain 1 L homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001091438.1 → NP_001084907.1  centromere protein S

      See identical proteins and their annotated locations for NP_001084907.1

      Status: PROVISIONAL

      Source sequence(s)
      BC070762
      UniProtKB/Swiss-Prot
      Q6NRI8
      UniProtKB/TrEMBL
      A0A1L8FKY4, A0A974HC79
      Related
      ENSXLAP00005102571.1, ENSXLAT00005104566.1
      Conserved Domains (1) summary
      pfam15630
      Location:13 → 88
      CENP-S; CENP-S protein

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      66577058..66616987
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041568464.1 → XP_041424398.1  centromere protein S isoform X1

      UniProtKB/Swiss-Prot
      Q6NRI8
      UniProtKB/TrEMBL
      A0A1L8FKY4, A0A974HC79
      Conserved Domains (1) summary
      pfam15630
      Location:13 → 88
      CENP-S; CENP-S protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NRI8.1 GenPept UniProtKB/Swiss-Prot:Q6NRI8

    Gene LinkOut

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