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    D030025E07Rik RIKEN cDNA D030025E07 gene [ Mus musculus (house mouse) ]

    Gene ID: 402774, updated on 2-Nov-2024

    Summary

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    Official Symbol
    D030025E07Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D030025E07 geneprovided by MGI
    Primary source
    MGI:MGI:3028083
    See related
    Ensembl:ENSMUSG00000105816 AllianceGenome:MGI:3028083
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Plyrr; Playrr
    Summary
    Is expressed in several structures, including gut; heart; liver; lung; and spleen. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See D030025E07Rik in Genome Data Viewer
    Location:
    3; 3 G2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (127910664..128025254, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (128117015..128231605, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 9830132P13 gene Neighboring gene STARR-seq mESC enhancer starr_08958 Neighboring gene STARR-positive B cell enhancer ABC_E9572 Neighboring gene predicted gene, 35667 Neighboring gene STARR-seq mESC enhancer starr_08959 Neighboring gene STARR-seq mESC enhancer starr_08960 Neighboring gene STARR-seq mESC enhancer starr_08961 Neighboring gene predicted gene, 52639 Neighboring gene predicted gene, 22293

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Hedgehog signaling activates a mammalian heterochronic gene regulatory network controlling differentiation timing across lineages. Rowton M, et al. Dev Cell, 2022 Sep 26. PMID 36108627, Free PMC Article
    2. Identification of atrial-enriched lncRNA Walras linked to cardiomyocyte cytoarchitecture and atrial fibrillation. García-Padilla C, et al. FASEB J, 2022 Jan. PMID 34861058, Free PMC Article
    3. Chromatin Architecture of the Pitx2 Locus Requires CTCF- and Pitx2-Dependent Asymmetry that Mirrors Embryonic Gut Laterality. Welsh IC, et al. Cell Rep, 2015 Oct 13. PMID 26411685, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045704.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC102472, AC115907, AK050844
      Related
      ENSMUST00000197413.5

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      127910664..128025254 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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