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    ptma.L prothymosin alpha L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 380536, updated on 3-Jul-2024

    Summary

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    Official Symbol
    ptma.L
    Official Full Name
    prothymosin alpha L homeolog
    Primary source
    Xenbase:XB-GENE-6256517
    Locus tag
    XELAEV_18003257mg
    See related
    EnsemblRapid:ENSXLAG00005016775
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    ptma; tmsa; ptma-a; ptma-b
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    Genomic context

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    See ptma.L in Genome Data Viewer
    Location:
    chromosome: 5L
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (107464079..107472933, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694835.1 (540004..548855, complement)

    Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD82 Neighboring gene nucleolin L homeolog Neighboring gene neuromedin U receptor 1 L homeolog Neighboring gene uncharacterized LOC108704672 Neighboring gene phosphodiesterase 6D L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Clone Names

    • MGC64300

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    prothymosin alpha-A
    Names
    prothymosin, alpha (gene sequence 28)
    thymosin alpha1
    NP_001080842.1
    XP_018096817.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001087373.1 → NP_001080842.1  prothymosin alpha-A

      See identical proteins and their annotated locations for NP_001080842.1

      Status: PROVISIONAL

      Source sequence(s)
      BC054174
      UniProtKB/Swiss-Prot
      Q5U274, Q7SZ20
      Related
      ENSXLAP00005049376.1, ENSXLAT00005050517.1
      Conserved Domains (1) summary
      pfam03247
      Location:2 → 110
      Prothymosin; Prothymosin/parathymosin family

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      107464079..107472933 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018241328.2 → XP_018096817.1  prothymosin alpha-A isoform X1

      UniProtKB/TrEMBL
      A0A8J0U4L5
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5U274.2 GenPept UniProtKB/Swiss-Prot:Q5U274

    Gene LinkOut

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