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    LOC345576 ubiquitin specific peptidase 7 (herpes virus-associated) pseudogene [ Homo sapiens (human) ]

    Gene ID: 345576, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC345576
    Gene description
    ubiquitin specific peptidase 7 (herpes virus-associated) pseudogene
    See related
    Ensembl:ENSG00000248827
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC345576 in Genome Data Viewer
    Location:
    5q21.3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (107724820..107727126)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (108227522..108229828)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (107060521..107062827)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, ATPase 1 pseudogene 5 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:106620899-106622098 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:106737319-106737856 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22862 Neighboring gene ephrin A5 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:106801251-106801752 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:106808214-106808968 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22863 Neighboring gene NANOG hESC enhancer GRCh37_chr5:106834891-106835392 Neighboring gene Sharpr-MPRA regulatory region 8638 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22864 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16212 Neighboring gene NANOG hESC enhancer GRCh37_chr5:106855351-106855852 Neighboring gene uncharacterized LOC124901038 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:106903957-106904492 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:106906417-106907128 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22867 Neighboring gene Sharpr-MPRA regulatory region 13332 Neighboring gene VISTA enhancer hs1734 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:106924851-106925777 Neighboring gene Sharpr-MPRA regulatory region 6875 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:106946073-106947272 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22868 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16213 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22869 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16215 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22870 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16214 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:107008991-107009490 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16216 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:107031758-107032266 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:107060476-107061675 Neighboring gene Sharpr-MPRA regulatory region 5849 Neighboring gene RNA, 7SL, cytoplasmic 782, pseudogene Neighboring gene uncharacterized LOC124901039

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_021894.3 

      Range
      101..2407
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      107724820..107727126
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      108227522..108229828
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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