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    Gm27162 predicted gene 27162 [ Mus musculus (house mouse) ]

    Gene ID: 330917, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm27162provided by MGI
    Official Full Name
    predicted gene 27162provided by MGI
    Primary source
    MGI:MGI:5521005
    See related
    AllianceGenome:MGI:5521005
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A430016B06
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm27162 in Genome Data Viewer
    Location:
    9; 9 A4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (32815365..32840262, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (32904069..32928966, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1110 Neighboring gene STARR-positive B cell enhancer ABC_E6722 Neighboring gene STARR-positive B cell enhancer ABC_E8853 Neighboring gene E26 avian leukemia oncogene 1, 5' domain Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:32524850-32525033 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:32548521-32548674 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:32548707-32548914 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:32555313-32555552 Neighboring gene predicted gene 3331 Neighboring gene STARR-seq mESC enhancer starr_23738 Neighboring gene STARR-seq mESC enhancer starr_23739 Neighboring gene STARR-seq mESC enhancer starr_23740 Neighboring gene STARR-seq mESC enhancer starr_23741 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:32733458-32733567 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:32736269-32736505 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:32738968-32739077 Neighboring gene STARR-seq mESC enhancer starr_23744 Neighboring gene STARR-seq mESC enhancer starr_23745 Neighboring gene predicted gene 27166 Neighboring gene predicted gene, 32171

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131058.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC124416

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      32815365..32840262 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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