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    AGA-DT AGA divergent transcript [ Homo sapiens (human) ]

    Gene ID: 285500, updated on 17-Sep-2024

    Summary

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    Official Symbol
    AGA-DTprovided by HGNC
    Official Full Name
    AGA divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:27730
    See related
    Ensembl:ENSG00000250131 AllianceGenome:HGNC:27730
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
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    Genomic context

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    See AGA-DT in Genome Data Viewer
    Location:
    4q34.3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (177442514..177697910)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (180781185..181036231)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (178363668..178619064)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377558 Neighboring gene Sharpr-MPRA regulatory region 1660 Neighboring gene nei like DNA glycosylase 3 Neighboring gene Sharpr-MPRA regulatory region 1546 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15819 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22170 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22171 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:178363543-178364086 Neighboring gene RNA, 5S ribosomal pseudogene 172 Neighboring gene aspartylglucosaminidase Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC105377559 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:178649038-178650237 Neighboring gene uncharacterized LOC105377560 Neighboring gene long intergenic non-protein coding RNA 1098 Neighboring gene uncharacterized LOC124900914 Neighboring gene long intergenic non-protein coding RNA 1099

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183777.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881, AC103879, AC106880

    2. NR_183778.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881, AC103879, AC106880

    3. NR_183779.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881, AC103879, AC106880

    4. NR_183780.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881, AC103879, AC106880

    5. NR_183781.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881, AC103879

    6. NR_183782.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881, AC103879, AC106880

    7. NR_183783.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881, AC103879

    8. NR_183784.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881, AC103879, AC106880

    9. NR_183785.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881, AC103879, AC106880

    10. NR_183786.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881, AC103879, AC106880

    11. NR_183787.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881, AC103879, AC106880

    12. NR_183788.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881, AC103879, AC106880
      Related
      ENST00000507023.1

    13. NR_183789.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881, AC103879, AC106880

    14. NR_183790.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881, AC106880

    15. NR_183791.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881

    16. NR_183792.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881

    17. NR_183793.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881

    18. NR_183794.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881

    19. NR_183795.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881

    20. NR_183796.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881

    21. NR_183797.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881

    22. NR_183798.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881

    23. NR_183799.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881

    24. NR_183800.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881

    25. NR_183801.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078881

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      177442514..177697910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      180781185..181036231
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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