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    agaR aga operon transcriptional repressor [ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ]

    Gene ID: 1254775, updated on 6-Oct-2023

    Summary

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    Gene symbol
    agaR
    Gene description
    aga operon transcriptional repressor
    Locus tag
    STM3252
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (strain: LT2, serovar: Typhimurium, sub-species: enterica, culture-collection: ATCC:700720, culture-collection: SGSC:1412, type-material: type strain of Salmonella enterica)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella
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    Genomic context

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    Sequence:
    NC_003197.2 (3421445..3422298, complement)

    NC_003197.2Genomic Context describing neighboring genes Neighboring gene galactarate dehydrogenase Neighboring gene putative ribokinase family sugar kinase Neighboring gene putative fructose/tagatose biphosphate aldolase Neighboring gene putative fructose-1-phosphate kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003197.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. McClelland M, et al. Nature, 2001 Oct 25. PMID 11677609

    GeneRIFs: Gene References Into Functions

    General gene information

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    regulatory

    • Loc: c3422298-3422293 regulatory_class = ribosome_binding_site

    General protein information

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    Preferred Names
    aga operon transcriptional repressor
    NP_462165.1
    • DeoR family; similar to E. coli putative DEOR-type transcriptional regulator of aga operon (AAC76165.1); Blastp hit to AAC76165.1 (269 aa), 26% identity in aa 10 - 252

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003197.2 Reference assembly

      Range
      3421445..3422298 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_462165.1 aga operon transcriptional repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]

      See identical proteins and their annotated locations for NP_462165.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3U2RPD7, A0A5T5FPU5, A0A5U0EIM7, A0A627SXB1, A0A6C8GXJ6, A0A746SWF5
      Conserved Domains (1) summary
      COG1349
      Location:11 → 247
      GlpR; DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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