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    LINC01297-DUXAP10-NBEAP6 LINC01297-DUXAP10-NBEAP6 readthrough [ Homo sapiens (human) ]

    Gene ID: 115801414, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LINC01297-DUXAP10-NBEAP6
    Gene description
    LINC01297-DUXAP10-NBEAP6 readthrough
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This locus represents naturally occurring readthrough transcription between the neighboring LINC01297 (long intergenic non-protein coding RNA 1297), DUXAP10 (double homeobox A pseudogene 10) and NBEAP6 (neurobeachin pseudogene 6) genes on chromosome 14. The readthrough transcripts at this locus contain multiple, short ORFs and are unlikely to produce a protein product. [provided by RefSeq, Sep 2019]
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    Genomic context

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    See LINC01297-DUXAP10-NBEAP6 in Genome Data Viewer
    Location:
    14q11.2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (19268803..19384288, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (13581937..13697394, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (19603418..19718903)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100420097 Neighboring gene neurobeachin pseudogene 6 Neighboring gene TOMM40 pseudogene 1 Neighboring gene double homeobox A pseudogene 10 Neighboring gene BMS1 pseudogene 17 Neighboring gene MPRA-validated peak2108 silencer Neighboring gene long intergenic non-protein coding RNA 1297 Neighboring gene GRAM domain containing 4 pseudogene 3 Neighboring gene uncharacterized LOC101929572 Neighboring gene POTE ankyrin domain family member G Neighboring gene RNA, U6 small nuclear 1268, pseudogene Neighboring gene uncharacterized LOC124903277

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_164308.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL512624, AL589743, AL929602

    2. NR_164309.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL512624, AL589743, AL929602

    3. NR_164310.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL512624, AL589743, AL929602

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      19268803..19384288 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      13581937..13697394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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