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    Gm20646 predicted gene 20646 [ Mus musculus (house mouse) ]

    Gene ID: 108167623, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm20646provided by MGI
    Official Full Name
    predicted gene 20646provided by MGI
    Primary source
    MGI:MGI:5313093
    See related
    Ensembl:ENSMUSG00000093436 AllianceGenome:MGI:5313093
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm46091
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm20646 in Genome Data Viewer
    Location:
    1 B; 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (42723698..42783951)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (42684538..42744791)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46089 Neighboring gene predicted gene, 36822 Neighboring gene POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1 Neighboring gene RIKEN cDNA 2900092D14 gene Neighboring gene POU domain, class 3, transcription factor 3 Neighboring gene POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2 Neighboring gene STARR-seq mESC enhancer starr_00768 Neighboring gene DNMT1 associated long intergenic non-coding RNA Neighboring gene predicted gene, 53552

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_168292.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC122898, AC133952

    2. NR_168293.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC122898, AC133952
      Related
      ENSMUST00000294523.1

    3. NR_168294.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC122898, AC133952
      Related
      ENSMUST00000176807.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      42723698..42783951
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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