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    LOC107986849 uncharacterized LOC107986849 [ Homo sapiens (human) ]

    Gene ID: 107986849, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC107986849
    Gene description
    uncharacterized LOC107986849
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC107986849 in Genome Data Viewer
    Location:
    7q32.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (131845060..131882932)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (133163670..133201645)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ribosomal protein S15a pseudogene 22 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:131410842-131411023 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:131411594-131412094 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:131412095-131412595 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:131417962-131418462 Neighboring gene MPRA-validated peak6729 silencer Neighboring gene NADH:ubiquinone oxidoreductase subunit B9 pseudogene 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:131459507-131460007 Neighboring gene NANOG hESC enhancer GRCh37_chr7:131476999-131477515 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:131524377-131525576 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:131580285-131581074 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:131581075-131581864 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:131581865-131582654 Neighboring gene CAPZA1 pseudogene 4 Neighboring gene uncharacterized LOC101928782 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26678 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18667

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      131845060..131882932
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001745363.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      133163670..133201645
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007077891.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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