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    ARHGAP29-AS1 ARHGAP29 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 107985092, updated on 22-Oct-2024

    Summary

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    Official Symbol
    ARHGAP29-AS1provided by HGNC
    Official Full Name
    ARHGAP29 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:54311
    See related
    Ensembl:ENSG00000226835 AllianceGenome:HGNC:54311
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See ARHGAP29-AS1 in Genome Data Viewer
    Location:
    1p22.1-p21.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (94247868..94334806)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (94090581..94184398)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378858 Neighboring gene small nucleolar RNA U13 Neighboring gene Sharpr-MPRA regulatory region 7015 Neighboring gene RNA, 7SL, cytoplasmic 440, pseudogene Neighboring gene Rho GTPase activating protein 29 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:94660072-94660283 Neighboring gene NANOG hESC enhancer GRCh37_chr1:94664929-94665459 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1092 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1093 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1095 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1094 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:94736061-94737260 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1346 Neighboring gene Sharpr-MPRA regulatory region 2220 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 29 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:94792875-94793386 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:94883134-94883925 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1347 Neighboring gene ATP binding cassette subfamily D member 3 Neighboring gene ribosomal protein L21 pseudogene 26 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1097 Neighboring gene coagulation factor III, tissue factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      94247868..94334806
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001738153.3 RNA Sequence

      Related
      ENST00000662164.1

    2. XR_002958338.2 RNA Sequence

      Related
      ENST00000418242.3

    3. XR_001738152.3 RNA Sequence

      Related
      ENST00000413103.4

    4. XR_001738151.3 RNA Sequence

      Related
      ENST00000660441.2

    5. XR_001738155.2 RNA Sequence

      Related
      ENST00000835324.1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      94090581..94184398
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007070461.1 RNA Sequence

    2. XR_007070457.1 RNA Sequence

    3. XR_007070458.1 RNA Sequence

    4. XR_007070456.1 RNA Sequence

    5. XR_007070459.1 RNA Sequence

    6. XR_007070460.1 RNA Sequence

    7. XR_007070455.1 RNA Sequence

    8. XR_007070462.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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