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    LRRK2-DT LRRK2 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 107984474, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LRRK2-DTprovided by HGNC
    Official Full Name
    LRRK2 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:40848
    See related
    AllianceGenome:HGNC:40848
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LRRK2-DT in Genome Data Viewer
    Location:
    12q12
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (40141766..40223822, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (40091677..40176180, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (40535568..40617624, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 member 13 Neighboring gene uncharacterized LOC112268095 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_28378 Neighboring gene Sharpr-MPRA regulatory region 12222 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4350 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4351 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4352 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4353 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_28385 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4354 Neighboring gene ribosomal protein L30 pseudogene 13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6206 Neighboring gene long intergenic non-protein coding RNA 2471 Neighboring gene uncharacterized LOC105369735 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4355 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6207 Neighboring gene long intergenic non-protein coding RNA 1779 Neighboring gene leucine rich repeat kinase 2 Neighboring gene uncharacterized LOC105369736 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_28494 Neighboring gene mucin 19, oligomeric (gene/pseudogene) Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:40868238-40869437 Neighboring gene microtubule associated protein 6 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_186756.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC079630

    2. NR_186757.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC079630

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      40141766..40223822 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      40091677..40176180 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases