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    LOC107984220 uncharacterized LOC107984220 [ Homo sapiens (human) ]

    Gene ID: 107984220, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC107984220
    Gene description
    uncharacterized LOC107984220
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC107984220 in Genome Data Viewer
    Location:
    10p11.21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (35296545..35306715, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (35325154..35335325, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2634 Neighboring gene RNA, U6 small nuclear 794, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr10:35536556-35536734 Neighboring gene RNA, U6 small nuclear 1167, pseudogene Neighboring gene cyclin Y Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:35588522-35589721 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2304 Neighboring gene Sharpr-MPRA regulatory region 12265 Neighboring gene CCNY antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2305 Neighboring gene Sharpr-MPRA regulatory region 1021 Neighboring gene Sharpr-MPRA regulatory region 675 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2306 Neighboring gene uncharacterized LOC124902410

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    General gene information

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    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      35296545..35306715 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007062113.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      35325154..35335325 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007080819.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases