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    LOC105378800 endogenous retrovirus group K member 21 Gag polyprotein-like [ Homo sapiens (human) ]

    Gene ID: 105378800, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105378800
    Gene description
    endogenous retrovirus group K member 21 Gag polyprotein-like
    Gene type
    pseudo
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105378800 in Genome Data Viewer
    Location:
    1p31.1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (73129148..73342515, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (72968099..73184023, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2797 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:73364724-73365332 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73445932-73446458 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73446459-73446984 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:73449654-73450520 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73452190-73452910 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73452911-73453630 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73453631-73454350 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:73603583-73603746 Neighboring gene keratin 8 pseudogene 21 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:73648977-73650176 Neighboring gene RN7SK pseudogene 19 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:73763727-73764228 Neighboring gene long intergenic non-protein coding RNA 1360 Neighboring gene uncharacterized LOC105378801 Neighboring gene uncharacterized LOC107985391

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      73129148..73342515 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      72968099..73184023 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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