U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC105378536 uncharacterized LOC105378536 [ Homo sapiens (human) ]

    Gene ID: 105378536, updated on 17-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC105378536
    Gene description
    uncharacterized LOC105378536
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC105378536 in Genome Data Viewer
    Location:
    10q26.13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (124132972..124151271, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (124998993..125028404, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125754121-125754683 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125754684-125755246 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125763289-125763856 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125763857-125764422 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125765089-125765590 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125779847-125780352 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125780353-125780859 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_10820 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125785865-125786861 Neighboring gene YBX2 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125793037-125793559 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125793560-125794081 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2906 Neighboring gene carbohydrate sulfotransferase 15 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4162 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125807976-125808476 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125808477-125808977 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125810019-125810519 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125816334-125816862 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:125819356-125820031 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125833493-125833992 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125832991-125833492 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4163 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2907 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4164 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4165 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:125927283-125928482 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:125929584-125930147 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125936098-125936598 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125958373-125958874 Neighboring gene uncharacterized LOC107984184 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:125996111-125997098 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126009557-126010056 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:126067885-126068602 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2908 Neighboring gene NANOG hESC enhancer GRCh37_chr10:126092029-126092572 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:126107534-126108193 Neighboring gene ornithine aminotransferase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      124132972..124151271 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007062328.1 RNA Sequence

    2. XR_946428.3 RNA Sequence

    3. XR_946427.3 RNA Sequence

    4. XR_001747632.2 RNA Sequence

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_011332693.1 Reference GRCh38.p14 PATCHES

      Range
      11779..41190 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_953253.3 RNA Sequence

    2. XR_007068912.1 RNA Sequence

    3. XR_953252.3 RNA Sequence

    4. XR_953251.3 RNA Sequence

    5. XR_001756847.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      124998993..125028404 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007081035.1 RNA Sequence

    2. XR_007081032.1 RNA Sequence

    3. XR_007081034.1 RNA Sequence

    4. XR_007081031.1 RNA Sequence

    5. XR_007081033.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials