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    LOC105377448 uncharacterized LOC105377448 [ Homo sapiens (human) ]

    Gene ID: 105377448, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105377448
    Gene description
    uncharacterized LOC105377448
    See related
    Ensembl:ENSG00000250195
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105377448 in Genome Data Viewer
    Location:
    4q31.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (138819957..139012646, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (142139247..142332562, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (139741111..139933800, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing 1 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:139476624-139477188 Neighboring gene NIN1 (RPN12) binding protein 1 homolog pseudogene Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:139568198-139569043 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:139578592-139579140 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:139579689-139580237 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:139580238-139580785 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:139580786-139581334 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:139581335-139581882 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:139660090-139660734 Neighboring gene GATA motif-containing MPRA enhancer 163 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:139696241-139696424 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:139764110-139765309 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:139787241-139787742 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:139821109-139821298 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:139831913-139832494 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21914 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:139854116-139854670 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:139898379-139899200 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21915 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21916 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:139935295-139936494 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21917 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15693 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:139949204-139949704 Neighboring gene uncharacterized LOC124900780 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:139951907-139952731 Neighboring gene RNA, U6 small nuclear 531, pseudogene Neighboring gene nocturnin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_133945.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX115310
      Related
      ENST00000511951.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      138819957..139012646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      142139247..142332562 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials