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    LOC105377039 uncharacterized LOC105377039 [ Homo sapiens (human) ]

    Gene ID: 105377039, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105377039
    Gene description
    uncharacterized LOC105377039
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105377039 in Genome Data Viewer
    Location:
    3p22.1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (39778654..39805868)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (39792041..39819290)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr3:39508789-39509471 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:39513805-39514612 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:39514613-39515420 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:39547383-39547882 Neighboring gene myelin associated oligodendrocyte basic protein Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:39618867-39619806 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:39624719-39625251 Neighboring gene NFE2L2 motif-containing MPRA enhancer 66 Neighboring gene NFU1 iron-sulfur cluster scaffold pseudogene 1 Neighboring gene MPRA-validated peak4615 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:39919113-39919614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:39919615-39920114 Neighboring gene myosin VIIA and Rab interacting protein Neighboring gene Sharpr-MPRA regulatory region 3241 Neighboring gene Sharpr-MPRA regulatory region 6637 Neighboring gene RNA, U4 small nuclear 56, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr3:40063846-40064360 Neighboring gene uncharacterized LOC124909367

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      39778654..39805868
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007095873.1 RNA Sequence

    2. XR_940753.2 RNA Sequence

    3. XR_940754.2 RNA Sequence

    4. XR_940750.1 RNA Sequence

    5. XR_007095874.1 RNA Sequence

    6. XR_940755.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      39792041..39819290
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007073449.1 RNA Sequence

    2. XR_007073448.1 RNA Sequence

    3. XR_007073447.1 RNA Sequence

    4. XR_007073451.1 RNA Sequence

    5. XR_007073450.1 RNA Sequence

    6. XR_007073452.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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