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    LOC105376095 uncharacterized LOC105376095 [ Homo sapiens (human) ]

    Gene ID: 105376095, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105376095
    Gene description
    uncharacterized LOC105376095
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in small intestine (RPKM 2.9), duodenum (RPKM 1.8) and 18 other tissues See more
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    Genomic context

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    See LOC105376095 in Genome Data Viewer
    Location:
    9q21.13-q21.2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (76592908..76677706)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (88749290..88834028)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376093 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19963 Neighboring gene peptidylprolyl isomerase A pseudogene 87 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28479 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28480 Neighboring gene prune homolog 2 with BCH domain Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:79284679-79285292 Neighboring gene NANOG hESC enhancer GRCh37_chr9:79303428-79303929 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28481 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:79398353-79399552 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:79402243-79402744 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:79402745-79403244 Neighboring gene prostate cancer associated 3 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:79502679-79503275 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:79512967-79513466 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19964 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:79571299-79571800 Neighboring gene LYPLA2 pseudogene 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      76592908..76677706
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007061586.1 RNA Sequence

    2. XR_007061588.1 RNA Sequence

    3. XR_007061590.1 RNA Sequence

    4. XR_007061595.1 RNA Sequence

    5. XR_007061589.1 RNA Sequence

    6. XR_007061587.1 RNA Sequence

    7. XR_007061591.1 RNA Sequence

    8. XR_007061593.1 RNA Sequence

    9. XR_007061592.1 RNA Sequence

    10. XR_007061596.1 RNA Sequence

    11. XR_002956900.2 RNA Sequence

    12. XR_007061594.1 RNA Sequence

    13. XR_007061597.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      88749290..88834028
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007080637.1 RNA Sequence

    2. XR_007080639.1 RNA Sequence

    3. XR_007080641.1 RNA Sequence

    4. XR_007080647.1 RNA Sequence

    5. XR_007080640.1 RNA Sequence

    6. XR_007080638.1 RNA Sequence

    7. XR_007080642.1 RNA Sequence

    8. XR_007080644.1 RNA Sequence

    9. XR_007080643.1 RNA Sequence

    10. XR_007080648.1 RNA Sequence

    11. XR_007080646.1 RNA Sequence

    12. XR_007080645.1 RNA Sequence

    13. XR_007080649.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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