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    LOC105375549 uncharacterized LOC105375549 [ Homo sapiens (human) ]

    Gene ID: 105375549, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105375549
    Gene description
    uncharacterized LOC105375549
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105375549 in Genome Data Viewer
    Location:
    7q35
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (143885451..143901953)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (145165851..145182316)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 115, member C pseudogene Neighboring gene TRPM8 channel associated factor 2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18726 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18727 Neighboring gene uncharacterized LOC112267988 Neighboring gene TRPM8 channel associated factor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26794 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26795 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:143598237-143598774 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18728 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:143602842-143603342 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:143603883-143604439 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:143632675-143633174 Neighboring gene olfactory receptor family 2 subfamily F member 2 Neighboring gene olfactory receptor family 2 subfamily F member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      143885451..143901953
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007060574.1 RNA Sequence

    2. XR_002956526.2 RNA Sequence

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_018654714.1 Reference GRCh38.p14 PATCHES

      Range
      429687..446185
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007069066.1 RNA Sequence

    2. XR_007069067.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      145165851..145182316
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007077977.1 RNA Sequence

    2. XR_007077978.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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