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    SNX10-AS1 SNX10 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 105375304, updated on 22-Oct-2024

    Summary

    Official Symbol
    SNX10-AS1provided by HGNC
    Official Full Name
    SNX10 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:55845
    See related
    Ensembl:ENSG00000225792 AllianceGenome:HGNC:55845
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in brain (RPKM 6.4), kidney (RPKM 6.1) and 21 other tissues See more
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    Genomic context

    See SNX10-AS1 in Genome Data Viewer
    Location:
    7p15.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (26372019..26399418, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (26507709..26535104, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (26411639..26439038, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18035 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:26262791-26262893 Neighboring gene chromobox 3 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:26302097-26302746 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:26311265-26311466 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18036 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18037 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25788 Neighboring gene ribosomal protein L23 pseudogene 7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26341907-26342408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26342409-26342908 Neighboring gene sorting nexin 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26375053-26375568 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26385227-26386154 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25789 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18038 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:26437325-26438281 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18040 Neighboring gene long intergenic non-protein coding RNA 2981 Neighboring gene NANOG hESC enhancer GRCh37_chr7:26455397-26455952 Neighboring gene uncharacterized LOC105375202 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:26480672-26481247 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:26481248-26481822 Neighboring gene VISTA enhancer hs769 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26547862-26548362 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26548363-26548863 Neighboring gene KIAA0087 lncRNA

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_136270.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BE218132, BG208557, CK824920, DB497744
      Related
      ENST00000451264.2
    2. NR_136271.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004540, AW403608, BG208557, CK824920
      Related
      ENST00000451368.1
    3. NR_136272.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004540
      Related
      ENST00000760565.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      26372019..26399418 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      26507709..26535104 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)