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    SDK1-AS1 SDK1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 105375132, updated on 17-Sep-2024

    Summary

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    Official Symbol
    SDK1-AS1provided by HGNC
    Official Full Name
    SDK1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40883
    See related
    AllianceGenome:HGNC:40883
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See SDK1-AS1 in Genome Data Viewer
    Location:
    7p22.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (3243547..3352085, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (3357803..3416685, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901574 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:3234434-3235114 Neighboring gene uncharacterized LOC124901575 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:3283525-3284724 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:3320540-3321077 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:3339451-3339963 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:3339964-3340475 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:3341185-3341685 Neighboring gene ribosomal protein L21 pseudogene 72 Neighboring gene uncharacterized LOC124901577 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:3439188-3439937 Neighboring gene sidekick cell adhesion molecule 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:3492607-3493001 Neighboring gene NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    Genotypes

    General gene information

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    Clone Names

    • AC073316.1, AC073316.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      3243547..3352085 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001744897.3 RNA Sequence

    2. XR_001744898.3 RNA Sequence

    3. XR_007060194.1 RNA Sequence

    4. XR_926997.4 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      3357803..3416685 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007078231.1 RNA Sequence

    2. XR_007078228.1 RNA Sequence

    3. XR_007078229.1 RNA Sequence

    4. XR_007078230.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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