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    LOC105374827 uncharacterized LOC105374827 [ Homo sapiens (human) ]

    Gene ID: 105374827, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105374827
    Gene description
    uncharacterized LOC105374827
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105374827 in Genome Data Viewer
    Location:
    2p12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (80912449..80955007, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (80912684..80955437, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene catenin alpha 2 Neighboring gene uncharacterized LOC107985904 Neighboring gene NANOG hESC enhancer GRCh37_chr2:80557197-80557699 Neighboring gene uncharacterized LOC105374824 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:80591811-80592596 Neighboring gene NANOG hESC enhancer GRCh37_chr2:80592898-80593415 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:80688730-80689234 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:80689235-80689740 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:80709895-80710095 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11685 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16095 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16097 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16096 Neighboring gene NANOG hESC enhancer GRCh37_chr2:81005685-81006186 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:81101296-81102149 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:81103634-81104173 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:81147049-81147550 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:81420933-81421434 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:81421435-81421934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:81433285-81433784 Neighboring gene ANKRD11 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr2:81622884-81623398 Neighboring gene CHMP4A pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      80912449..80955007 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_940291.2 RNA Sequence

    2. XR_940292.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      80912684..80955437 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007073017.1 RNA Sequence

    2. XR_007073016.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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