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    LOC105373890 uncharacterized LOC105373890 [ Homo sapiens (human) ]

    Gene ID: 105373890, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105373890
    Gene description
    uncharacterized LOC105373890
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105373890 in Genome Data Viewer
    Location:
    2q35
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (219905000..219940772)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (220389589..220425367)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373888 Neighboring gene VISTA enhancer hs1507 Neighboring gene NANOG hESC enhancer GRCh37_chr2:220726091-220726592 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12363 Neighboring gene VISTA enhancer hs1635 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:220796198-220796899 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:220796900-220797600 Neighboring gene long intergenic non-protein coding RNA 1803 Neighboring gene uncharacterized LOC105373891 Neighboring gene microRNA 4268 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:220829383-220830048 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:220830049-220830714 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:220833104-220834303 Neighboring gene uncharacterized LOC105373893 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:220945827-220946367 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:221134071-221134638 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:221282056-221282733

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      219905000..219940772
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001739233.2 RNA Sequence

    2. XR_923927.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      220389589..220425367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007072858.1 RNA Sequence

    2. XR_007072857.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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