U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC105373531 uncharacterized LOC105373531 [ Homo sapiens (human) ]

    Gene ID: 105373531, updated on 17-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC105373531
    Gene description
    uncharacterized LOC105373531
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC105373531 in Genome Data Viewer
    Location:
    2q12.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (105942722..105971191)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (106404012..106432867)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11840 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11841 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11842 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16318 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16319 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16320 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:106378480-106379325 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106385690-106386192 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106386193-106386695 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16321 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16322 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:106394362-106394862 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:106399357-106399857 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106403143-106403714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16324 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16325 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16326 Neighboring gene NCK adaptor protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11843 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11844 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16327 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16328 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16331 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106428458-106428958 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106428959-106429459 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16332 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16333 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16335 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:106497364-106498144 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:106498145-106498923 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16336 Neighboring gene uncharacterized LOC105373530 Neighboring gene NANOG hESC enhancer GRCh37_chr2:106567089-106567923 Neighboring gene uncharacterized LOC124906055 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:106669310-106670509 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:106713148-106713820 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:106713821-106714492 Neighboring gene ECRG4 augurin precursor Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:106746920-106747434 Neighboring gene UDP-glucuronate decarboxylase 1 Neighboring gene Sharpr-MPRA regulatory region 936 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16337 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16338 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:106781527-106782046 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11845 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16339 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11846

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      105942722..105971191
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_923144.3 RNA Sequence

    2. XR_923145.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      106404012..106432867
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007072358.1 RNA Sequence

    2. XR_007072357.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials