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    LOC105373436 uncharacterized LOC105373436 [ Homo sapiens (human) ]

    Gene ID: 105373436, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105373436
    Gene description
    uncharacterized LOC105373436
    See related
    Ensembl:ENSG00000285876
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105373436 in Genome Data Viewer
    Location:
    2p24.3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (13000789..13331683)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (13029865..13321461)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905974 Neighboring gene CRISPRi-validated cis-regulatory element chr2.599 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11182 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:12856972-12857611 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:12858891-12859528 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:12866409-12867608 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15341 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15342 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:12909653-12910503 Neighboring gene microRNA 3125 Neighboring gene tribbles pseudokinase 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:12956433-12957632 Neighboring gene CRISPR/Cas9-targeted silencer 9 Neighboring gene uncharacterized LOC100506474 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:13120952-13121455 Neighboring gene uncharacterized LOC105373484 Neighboring gene uncharacterized LOC105373437 Neighboring gene NANOG hESC enhancer GRCh37_chr2:13652552-13653084 Neighboring gene uncharacterized LOC105373485 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:13662708-13663907

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      13000789..13331683
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001739293.2 RNA Sequence

      Related
      ENST00000647894.1

    2. XR_001739292.2 RNA Sequence

    3. XR_001739291.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      13029865..13321461
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007071813.1 RNA Sequence

    2. XR_007071812.1 RNA Sequence

    3. XR_007071814.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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