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    LOC105373170 uncharacterized LOC105373170 [ Homo sapiens (human) ]

    Gene ID: 105373170, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105373170
    Gene description
    uncharacterized LOC105373170
    See related
    Ensembl:ENSG00000286071
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward heart (RPKM 10.2) See more
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    Genomic context

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    See LOC105373170 in Genome Data Viewer
    Location:
    1q42.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (231805575..231847703, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (231191109..231248575, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene TSNAX-DISC1 readthrough (NMD candidate) Neighboring gene long intergenic non-protein coding RNA 582 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2731 Neighboring gene MPRA-validated peak764 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1954 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1955 Neighboring gene MPRA-validated peak765 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:231787555-231788055 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:231787054-231787554 Neighboring gene DISC1 scaffold protein Neighboring gene ReSE screen-validated silencer GRCh37_chr1:231830220-231830402 Neighboring gene RNA, U5A small nuclear 5, pseudogene Neighboring gene MPRA-validated peak767 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr1:231967105-231967615 Neighboring gene disrupted in schizophrenia 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1956 Neighboring gene DISC1 intronic transcript 1 Neighboring gene uncharacterized LOC124904549

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      231805575..231847703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_949268.4 RNA Sequence

    2. XR_949269.3 RNA Sequence

      Related
      ENST00000652124.1

    3. XR_007066940.1 RNA Sequence

      Related
      ENST00000651043.3

    4. XR_001738521.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      231191109..231248575 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007071182.1 RNA Sequence

    2. XR_007071184.1 RNA Sequence

    3. XR_007071181.1 RNA Sequence

    4. XR_007071183.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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