U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LINC02815 long intergenic non-protein coding RNA 2815 [ Homo sapiens (human) ]

    Gene ID: 105373158, updated on 17-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LINC02815provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2815provided by HGNC
    Primary source
    HGNC:HGNC:54347
    See related
    Ensembl:ENSG00000236975
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LINC02815 in Genome Data Viewer
    Location:
    1q42.13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (229087100..229154725, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (228465719..228533353, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (229222847..229290472, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904539 Neighboring gene uncharacterized LOC105373143 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229092976-229093836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229115036-229115642 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229125306-229126056 Neighboring gene Sharpr-MPRA regulatory region 10577 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229163271-229164008 Neighboring gene Sharpr-MPRA regulatory region 2676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229194589-229195089 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229195717-229196216 Neighboring gene iron-sulfur cluster assembly 1 pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229223803-229224521 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229227240-229228172 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229228173-229229104 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229243991-229244514 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229244515-229245036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229251653-229252154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229252155-229252654 Neighboring gene Sharpr-MPRA regulatory region 2560 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229295511-229296011 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229297904-229298404 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229298405-229298905 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:229309691-229310255 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:229313110-229314036 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:229314037-229314963 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:229314964-229315890 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2699 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:229333469-229333968 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229338935-229339572 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229341375-229341982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229356687-229357188 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229357189-229357688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229360637-229361210 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:229363801-229364526 Neighboring gene Sharpr-MPRA regulatory region 11146 Neighboring gene uncharacterized LOC102723935 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229388645-229389519 Neighboring gene uncharacterized LOC124904540 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:229389520-229390393 Neighboring gene RAB4A antisense RNA 1 Neighboring gene transmembrane protein 78

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_186725.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137793, BX321878

    2. NR_186726.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137793, BX321878

    3. NR_186727.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137793, BX321878

    4. NR_186728.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137793

    5. NR_186729.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137793
      Related
      ENST00000662083.1

    6. NR_186730.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137793

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      229087100..229154725 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      228465719..228533353 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials