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    LOC105372130 uncharacterized LOC105372130 [ Homo sapiens (human) ]

    Gene ID: 105372130, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105372130
    Gene description
    uncharacterized LOC105372130
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105372130 in Genome Data Viewer
    Location:
    18q21.2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (55665277..55842399)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (55868373..56045176)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene transcription factor 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13360 Neighboring gene uncharacterized LOC105372126 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:53295077-53295576 Neighboring gene ribosomal protein L21 pseudogene 126 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:53388528-53389317 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:53420614-53421813 Neighboring gene Sharpr-MPRA regulatory region 1296 Neighboring gene long intergenic non-protein coding RNA 1415 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:53500200-53501399 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:53517802-53518302 Neighboring gene uncharacterized LOC107985183 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:53525319-53525818 Neighboring gene uncharacterized LOC105372131

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      55665277..55842399
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007066382.1 RNA Sequence

    2. XR_935488.3 RNA Sequence

    3. XR_007066383.1 RNA Sequence

    4. XR_935487.3 RNA Sequence

    5. XR_935489.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      55868373..56045176
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007088188.1 RNA Sequence

    2. XR_007088187.1 RNA Sequence

    3. XR_007088189.1 RNA Sequence

    4. XR_007088190.1 RNA Sequence

    5. XR_007088186.1 RNA Sequence

    6. XR_007088191.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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