U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC105369617 uncharacterized LOC105369617 [ Homo sapiens (human) ]

    Gene ID: 105369617, updated on 17-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC105369617
    Gene description
    uncharacterized LOC105369617
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC105369617 in Genome Data Viewer
    Location:
    12p13.32-p13.31
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (5121947..5379744)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (5128296..5385968)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (5231113..5488910)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:5142219-5142718 Neighboring gene NANOG hESC enhancer GRCh37_chr12:5143579-5144113 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5838 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5839 Neighboring gene eukaryotic translation initiation factor 3 subunit F pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5840 Neighboring gene potassium voltage-gated channel subfamily A member 5 Neighboring gene 12p13 distal LINE-mediated recombination region Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:5248742-5249941 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:5280991-5281727 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:5282196-5283395 Neighboring gene uncharacterized LOC124902864 Neighboring gene uncharacterized LOC105369616 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr12:5330975-5331795 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:5341834-5342334 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:5342335-5342835 Neighboring gene Sharpr-MPRA regulatory region 8722 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:5355081-5355848 Neighboring gene long intergenic non-protein coding RNA 2443 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:5377405-5378062 Neighboring gene 12p13 proximal LINE-mediated recombination region Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:5399277-5399846 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:5399847-5400415 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:5497373-5498572 Neighboring gene uncharacterized LOC105369618 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:5542091-5542616 Neighboring gene neurotrophin 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188065.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC005906, AC006206, AC007848, AC022362

    2. NR_188066.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC005906, AC006206, AC007848, AC022362

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      5121947..5379744
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      5128296..5385968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials