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    Gm40447 predicted gene, 40447 [ Mus musculus (house mouse) ]

    Gene ID: 105244925, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm40447provided by MGI
    Official Full Name
    predicted gene, 40447provided by MGI
    Primary source
    MGI:MGI:5623332
    See related
    AllianceGenome:MGI:5623332
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in ovary adult (RPKM 1.4), genital fat pad adult (RPKM 0.9) and 17 other tissues See more
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    Genomic context

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    See Gm40447 in Genome Data Viewer
    Location:
    12 C3; 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (75792553..75866402, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (75745779..75819628, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40890 Neighboring gene sphingosine-1-phosphate phosphatase 1 Neighboring gene STARR-seq mESC enhancer starr_32502 Neighboring gene spectrin repeat containing, nuclear envelope 2 Neighboring gene STARR-seq mESC enhancer starr_32504 Neighboring gene STARR-seq mESC enhancer starr_32505 Neighboring gene microRNA 5101 Neighboring gene STARR-seq mESC enhancer starr_32508 Neighboring gene estrogen receptor 2 (beta) Neighboring gene non-histone chromosomal protein HMG-14 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    collagen alpha-1(II) chain-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      75792553..75866402 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011244246.1 → XP_011242548.1  collagen alpha-1(II) chain-like

      See identical proteins and their annotated locations for XP_011242548.1

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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