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    LOC102723445 uncharacterized LOC102723445 [ Homo sapiens (human) ]

    Gene ID: 102723445, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC102723445
    Gene description
    uncharacterized LOC102723445
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC102723445 in Genome Data Viewer
    Location:
    6q23.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (131084992..131130361, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (132280417..132324805, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25062 Neighboring gene Sharpr-MPRA regulatory region 2744 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_89712 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_89717 Neighboring gene erythrocyte membrane protein band 4.1 like 2 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_89732 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17541 Neighboring gene Sharpr-MPRA regulatory region 6396 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_89750 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:131314249-131315096 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_89780 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17542 Neighboring gene uncharacterized LOC105378004 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17543 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_89797 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:131456238-131456738 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17545 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25063 Neighboring gene NANOG hESC enhancer GRCh37_chr6:131460844-131461345 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:131463068-131463791 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:131464515-131465238 Neighboring gene MPRA-validated peak6126 silencer Neighboring gene double PHD fingers 2 pseudogene Neighboring gene A-kinase anchoring protein 7 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25064 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25065 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:131547081-131547840 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_89836 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:131602472-131602980 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:131602981-131603489 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:131613147-131613647 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:131616173-131616853 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:131622043-131622551 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:131621535-131622042 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:131644204-131644992 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:131649720-131650506 Neighboring gene NANOG hESC enhancer GRCh37_chr6:131657722-131658239 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:131659077-131660032 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:131660033-131660988 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:131661945-131662898 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:131664207-131664894 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:131664895-131665583 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:131665584-131666271 Neighboring gene uncharacterized LOC105378005 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:131677980-131679179

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Genome-wide meta-analysis identifies new susceptibility loci for migraine. Anttila V, et al. Nat Genet, 2013 Aug. PMID 23793025, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide meta-analysis identifies new susceptibility loci for migraine.
    EBI GWAS Catalog

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      131084992..131130361 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_428022.3 RNA Sequence

    2. XR_942994.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      132280417..132324805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007077142.1 RNA Sequence

    2. XR_007077141.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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