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    FRG1DP FSHD region gene 1 family member D, pseudogene [ Homo sapiens (human) ]

    Gene ID: 102723316, updated on 17-Sep-2024

    Summary

    Official Symbol
    FRG1DPprovided by HGNC
    Official Full Name
    FSHD region gene 1 family member D, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:51763
    See related
    AllianceGenome:HGNC:51763
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in placenta (RPKM 2.5), prostate (RPKM 0.3) and 9 other tissues See more
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    Genomic context

    See FRG1DP in Genome Data Viewer
    Location:
    20q11.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (29080390..29096832)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (31543277..31559725, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904967 Neighboring gene NANOG hESC enhancer GRCh37_chr20:26280570-26281071 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:26313298-26313875 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:26313876-26314454 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:26314455-26315031 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:26318213-26318766 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17681 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17682 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12755 Neighboring gene FSHD region gene 1 family member C, pseudogene Neighboring gene RNA, 5.8S ribosomal pseudogene Neighboring gene RNA, 18S ribosomal pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_132316.1 RNA Sequence

      Status: INFERRED

      Source sequence(s)
      ABBA01015879

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      29080390..29096832
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      31543277..31559725 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)