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    LINC01350 long intergenic non-protein coding RNA 1350 [ Homo sapiens (human) ]

    Gene ID: 101929093, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01350provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1350provided by HGNC
    Primary source
    HGNC:HGNC:50575
    See related
    Ensembl:ENSG00000228309 AllianceGenome:HGNC:50575
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GS1-204I12.1
    Expression
    Restricted expression toward testis (RPKM 13.5) See more
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    Genomic context

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    See LINC01350 in Genome Data Viewer
    Location:
    1q25.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (185558379..185628488, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (184913006..184983161, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (185527511..185597620, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2244 Neighboring gene RNA, U7 small nuclear 183 pseudogene Neighboring gene MAPK regulated corepressor interacting protein 2 pseudogene 2 Neighboring gene uncharacterized LOC107985239 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:185500818-185501477 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:185507470-185508120 Neighboring gene MPRA-validated peak505 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:185554623-185555822 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2245 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:185615105-185616018 Neighboring gene uncharacterized GS1-204I12.4 Neighboring gene NANOG hESC enhancer GRCh37_chr1:185663280-185663781 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:185668941-185669602 Neighboring gene MPRA-validated peak509 silencer Neighboring gene hemicentin 1 Neighboring gene MPRA-validated peak510 silencer Neighboring gene MPRA-validated peak511 silencer Neighboring gene Sharpr-MPRA regulatory region 5860 Neighboring gene MPRA-validated peak512 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:185917425-185918340 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:185922788-185923626 Neighboring gene MPRA-validated peak513 silencer Neighboring gene uncharacterized LOC105371654

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25. Silva AP, et al. Gene, 2003 May 22. PMID 12801632

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110793.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AF508906, AF510427
      Related
      ENST00000608417.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      185558379..185628488 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      184913006..184983161 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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