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    RHOXF1-AS1 RHOXF1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101928969, updated on 17-Sep-2024

    Summary

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    Official Symbol
    RHOXF1-AS1provided by HGNC
    Official Full Name
    RHOXF1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:51582
    See related
    Ensembl:ENSG00000258545 AllianceGenome:HGNC:51582
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in fat (RPKM 5.7), lung (RPKM 1.8) and 5 other tissues See more
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    Genomic context

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    See RHOXF1-AS1 in Genome Data Viewer
    Location:
    Xq24
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (120036236..120146855)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (118411395..118521968)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (119170201..119280761)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:119134387-119134905 Neighboring gene Rhox homeobox family member 1 pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:119148782-119148953 Neighboring gene Rhox homeobox family member 1 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chrX:119177771-119178272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:119185571-119186072 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:119186073-119186572 Neighboring gene Rhox homeobox family member 2B Neighboring gene ReSE screen-validated silencer GRCh37_chrX:119254442-119254623 Neighboring gene Rhox homeobox family member 1 Neighboring gene long intergenic non-protein coding RNA 1402 Neighboring gene Rhox homeobox family member 2 Neighboring gene SFR1 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131238.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC240549, AC240732, AK123976, CA413661
      Related
      ENST00000553843.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      120036236..120146855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      118411395..118521968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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