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    ERICH6-AS1 ERICH6 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101928085, updated on 22-Oct-2024

    Summary

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    Official Symbol
    ERICH6-AS1provided by HGNC
    Official Full Name
    ERICH6 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:41205
    See related
    Ensembl:ENSG00000240137 AllianceGenome:HGNC:41205
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 3.4), kidney (RPKM 0.9) and 18 other tissues See more
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    Genomic context

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    See ERICH6-AS1 in Genome Data Viewer
    Location:
    3q25.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (150703564..150720146)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (153454811..153471374)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (150421351..150437933)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900547 Neighboring gene eukaryotic translation initiation factor 2A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20688 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20689 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20691 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:150321219-150321992 Neighboring gene selenoprotein T Neighboring gene SAP30 pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 4372 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20694 Neighboring gene glutamate rich 6 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20696 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20695 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:150442941-150443442 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:150443443-150443942 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:150445187-150445686 Neighboring gene CRISPRi-validated cis-regulatory element chr3.4443 Neighboring gene CRISPRi-validated cis-regulatory element chr3.4444 Neighboring gene uncharacterized LOC101928105 Neighboring gene small nuclear ribonucleoprotein polypeptide C pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14817 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20697 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20698 Neighboring gene siah E3 ubiquitin protein ligase 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:150480427-150481373 Neighboring gene SIAH2 and CLRN1 antisense RNA 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. cDNA microarray analysis of altered gene expression in Ara-C-treated leukemia cells. Takagaki K, et al. Biochem Biophys Res Commun, 2003 Sep 19. PMID 12951057
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_121674.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC011317, DA374305, DB324976
      Related
      ENST00000475393.4

    2. NR_121675.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two exons and contains an alternate 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC011317
      Related
      ENST00000771366.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      150703564..150720146
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      153454811..153471374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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