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    LINC02653 long intergenic non-protein coding RNA 2653 [ Homo sapiens (human) ]

    Gene ID: 101926942, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC02653provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2653provided by HGNC
    Primary source
    HGNC:HGNC:54138
    See related
    Ensembl:ENSG00000236373 AllianceGenome:HGNC:54138
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02653 in Genome Data Viewer
    Location:
    10q23.31
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (90402521..90540805, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (91286096..91424394, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (92162278..92300562, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378426 Neighboring gene NANOG hESC enhancer GRCh37_chr10:91951269-91951830 Neighboring gene RN7SK pseudogene 143 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:92010611-92011239 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:92061535-92062047 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:92062048-92062560 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:92078769-92079504 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:92079505-92080238 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:92243978-92245177 Neighboring gene uncharacterized LOC124902478 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3755 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:92564844-92565562 Neighboring gene 5-hydroxytryptamine receptor 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2600 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2601

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110657.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL359919, BC030278
      Related
      ENST00000418379.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      90402521..90540805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      91286096..91424394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials