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    ARHGAP31-AS1 ARHGAP31 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100874246, updated on 17-Sep-2024

    Summary

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    Official Symbol
    ARHGAP31-AS1provided by HGNC
    Official Full Name
    ARHGAP31 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:41235
    See related
    Ensembl:ENSG00000241155 AllianceGenome:HGNC:41235
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See ARHGAP31-AS1 in Genome Data Viewer
    Location:
    3q13.33
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (119314293..119322760, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (122034004..122042471, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (119033140..119041607, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene beta-1,4-galactosyltransferase 4 Neighboring gene B4GALT4 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14625 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14626 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:118975541-118976279 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20294 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20295 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14627 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20296 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20297 Neighboring gene Sharpr-MPRA regulatory region 6621 Neighboring gene Rho GTPase activating protein 31 Neighboring gene ribosomal protein S26 pseudogene 21 Neighboring gene NANOG hESC enhancer GRCh37_chr3:119028728-119029229 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr3:119041278-119042135 and GRCh37_chr3:119042136-119042992 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20298 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20299 Neighboring gene RNA, U6 small nuclear 1127, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:119068069-119068893 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:119070415-119071112 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:119079699-119080370 Neighboring gene uncharacterized LOC124906273

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • ARHGAP31 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046748.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092981
      Related
      ENST00000466292.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      119314293..119322760 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      122034004..122042471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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