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    LOC100506974 uncharacterized LOC100506974 [ Homo sapiens (human) ]

    Gene ID: 100506974, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC100506974
    Gene description
    uncharacterized LOC100506974
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC100506974 in Genome Data Viewer
    Location:
    17p12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (13790327..13898625, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (13698111..13806508, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371544 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:13536554-13537054 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:13537055-13537555 Neighboring gene NANOG hESC enhancer GRCh37_chr17:13543773-13544290 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:13545849-13546650 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:13546651-13547452 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:13574799-13575300 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:13575301-13575800 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:13654264-13654764 Neighboring gene MPRA-validated peak2744 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47013 Neighboring gene uncharacterized LOC107985014 Neighboring gene NANOG hESC enhancer GRCh37_chr17:13778177-13778694 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:13825822-13826354 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:13826355-13826887 Neighboring gene CDRT15 pseudogene 1 Neighboring gene COX10 divergent transcript

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Genome-wide association study of conduct disorder symptomatology. Dick DM, et al. Mol Psychiatry, 2011 Aug. PMID 20585324, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study of conduct disorder symptomatology.
    EBI GWAS Catalog

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      13790327..13898625 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001752796.1 RNA Sequence

    2. XR_001752794.1 RNA Sequence

    3. XR_001752797.1 RNA Sequence

    4. XR_001752795.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      13698111..13806508 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007087910.1 RNA Sequence

    2. XR_007087908.1 RNA Sequence

    3. XR_007087911.1 RNA Sequence

    4. XR_007087909.1 RNA Sequence

    5. XR_007087907.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Chemical Information
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    Research Materials