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    skr-2 Skp1-related protein [ Caenorhabditis elegans ]

    Gene ID: 172773, updated on 2-Nov-2024

    Summary

    Official Symbol
    skr-2
    Official Full Name
    Skp1-related protein
    Primary source
    WormBase:WBGene00004808
    Locus tag
    CELE_F46A9.4
    See related
    AllianceGenome:WB:WBGene00004808
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable cullin family protein binding activity. Involved in several processes, including establishment of mitotic spindle orientation; negative regulation of centrosome duplication; and regulation of protein stability. Part of SCF ubiquitin ligase complex. Is expressed in intestine. Orthologous to human SKP1 (S-phase kinase associated protein 1). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See skr-2 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    3
    Sequence:
    Chromosome: I; NC_003279.8 (9469654..9470637)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene MATH (Meprin-associated Traf homology) domain containing Neighboring gene Potassium channel domain-containing protein Neighboring gene Skp1-related protein Neighboring gene EF-hand domain-containing protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables cullin family protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    Skp1-related protein
    NP_492512.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      9469654..9470637
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_060111.7NP_492512.1  Skp1-related protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_492512.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EDD8
      Conserved Domains (3) summary
      smart00512
      Location:16124
      Skp1; Found in Skp1 protein family
      COG5201
      Location:16174
      SKP1; SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
      pfam01466
      Location:99172
      Skp1; Skp1 family, dimerization domain