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TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 3766796, updated on 18-Sep-2024

Summary

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Official Full Name
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
Primary source
TAIR:AT1G26200
Locus tag
AT1G26200
See related
Araport:AT1G26200
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28B23.26
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (9063306..9065320, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene uncharacterized protein Neighboring gene Phosphoribulokinase / Uridine kinase family Neighboring gene ncRNA Neighboring gene SOB five-like 1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables sphingosine N-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
NP_001154368.1
  • TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG1 longevity assurance homolog 3 (TAIR:AT1G13580.3); Has 1245 Blast hits to 1245 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 593; Fungi - 293; Plants - 188; Viruses - 3; Other Eukaryotes - 168 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9063306..9065320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001160896.2 → NP_001154368.1  TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154368.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W7K4, A0A654ENP7, F4IE43
    Conserved Domains (1) summary
    pfam03798
    Location:70 → 283
    TRAM_LAG1_CLN8; TLC domain

  2. NM_001332697.1 → NP_001323183.1  TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W7K4, A0A1P8AW96, A0A7G2DT80
    Conserved Domains (1) summary
    pfam03798
    Location:70 → 294
    TRAM_LAG1_CLN8; TLC domain

  3. NM_001332696.1 → NP_001323182.1  TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AWB7
Nucleotide Protein
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