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ZC3H11A zinc finger CCCH-type containing 11A [ Homo sapiens (human) ]

Gene ID: 9877, updated on 2-Nov-2024

Summary

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Official Symbol
ZC3H11Aprovided by HGNC
Official Full Name
zinc finger CCCH-type containing 11Aprovided by HGNC
Primary source
HGNC:HGNC:29093
See related
Ensembl:ENSG00000058673 MIM:613513; AllianceGenome:HGNC:29093
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZC3HDC11A
Summary
Enables RNA binding activity. Involved in poly(A)+ mRNA export from nucleus. Located in transcription export complex. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in skin (RPKM 33.1), lymph node (RPKM 28.6) and 25 other tissues See more
Orthologs
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Genomic context

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See ZC3H11A in Genome Data Viewer
Location:
1q32.1
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (203795623..203854124)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (203058813..203118077)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (203764751..203823252)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATPase plasma membrane Ca2+ transporting 4 Neighboring gene uncharacterized LOC102723543 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:203722055-203722656 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2354 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2355 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:203741871-203742446 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2356 Neighboring gene lymphocyte transmembrane adaptor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2357 Neighboring gene uncharacterized LOC128031836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:203772353-203772854 Neighboring gene charged multivesicular body protein 5 pseudogene Neighboring gene zinc finger BED-type containing 6 Neighboring gene MPRA-validated peak661 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:203810670-203811170 Neighboring gene ribosomal protein L35a pseudogene 5 Neighboring gene Sharpr-MPRA regulatory region 5904 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:203831257-203831832 Neighboring gene small nuclear ribonucleoprotein polypeptide E Neighboring gene keratin 8 pseudogene 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Multiple nuclear-replicating viruses require the stress-induced protein ZC3H11A for efficient growth. Younis S, et al. Proc Natl Acad Sci U S A, 2018 Apr 17. PMID 29610341, Free PMC Article
  2. The RNA-binding protein ZC3H11A interacts with the nuclear poly(A)-binding protein PABPN1 and alters polyadenylation of viral transcripts. Kases K, et al. J Biol Chem, 2023 Aug. PMID 37356722, Free PMC Article
  3. Genome-wide association analysis in East Asians identifies breast cancer susceptibility loci at 1q32.1, 5q14.3 and 15q26.1. Cai Q, et al. Nat Genet, 2014 Aug. PMID 25038754, Free PMC Article
  4. The proteins PDIP3 and ZC11A associate with the human TREX complex in an ATP-dependent manner and function in mRNA export. Folco EG, et al. PLoS One, 2012. PMID 22928037, Free PMC Article
  5. Proliferating cell nuclear antigen (PCNA)-associated KIAA0101/PAF15 protein is a cell cycle-regulated anaphase-promoting complex/cyclosome substrate. Emanuele MJ, et al. Proc Natl Acad Sci U S A, 2011 Jun 14. PMID 21628590, Free PMC Article

See all (113) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The RNA-binding protein ZC3H11A interacts with the nuclear poly(A)-binding protein PABPN1 and alters polyadenylation of viral transcripts.
    Title: The RNA-binding protein ZC3H11A interacts with the nuclear poly(A)-binding protein PABPN1 and alters polyadenylation of viral transcripts.
  2. Knockout of ZC3H11A in HeLa cells demonstrated that several nuclear-replicating viruses are dependent on ZC3H11A for efficient growth whereas cytoplasmic replicating viruses are not. ZC3H11A binds to short purine-rich ribonucleotide stretches in cellular and adenoviral transcripts. ZC3H11A is important for maintaining nuclear export of mRNAs during stress. Several nuclear-replicating viruses take advantage of this.
    Title: Multiple nuclear-replicating viruses require the stress-induced protein ZC3H11A for efficient growth.
  3. PDIP3 and ZC11A associate with the human TREX complex in an ATP-dependent manner and function in mRNA export.
    Title: The proteins PDIP3 and ZC11A associate with the human TREX complex in an ATP-dependent manner and function in mRNA export.
  4. Observational study of gene-disease association. (HuGE Navigator)
    Title: Follow-up of a major linkage peak on chromosome 1 reveals suggestive QTLs associated with essential hypertension: GenNet study.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association analysis in East Asians identifies breast cancer susceptibility loci at 1q32.1, 5q14.3 and 15q26.1.
EBI GWAS Catalog

Variation

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See Variation Viewer (GRCh37.p13)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • KIAA0663, DKFZp781G2455, DKFZp686D03108, DKFZp686F14109

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding HDA PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in poly(A)+ mRNA export from nucleus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm TAS
Traceable Author Statement
more info
  
part_of transcription export complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 11A
Names
zinc finger CCCH-type domain containing 11A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001319238.2 → NP_001306167.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1-7 encode the same protein (isoform 1).
    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Related
    ENSP00000356183.1, ENST00000367214.5
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  2. NM_001319239.2 → NP_001306168.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1-7 encode the same protein (isoform 1).
    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Related
    ENSP00000333253.4, ENST00000332127.8
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  3. NM_001350261.2 → NP_001337190.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1-7 encode the same protein (isoform 1).
    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  4. NM_001350262.2 → NP_001337191.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1-7 encode the same protein (isoform 1).
    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  5. NM_001350263.2 → NP_001337192.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR compared to variant 1. Variants 1-7 encode the same protein (isoform 1).
    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  6. NM_001350264.2 → NP_001337193.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR compared to variant 1. Variants 1-7 encode the same protein (isoform 1).
    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  7. NM_001350265.2 → NP_001337194.1  zinc finger CCCH domain-containing protein 11A isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) differs in the 5' UTR and uses an alternate in-frame splice site in the 3' coding region. The encoded isoform (2) has the same N- and C-termini, but is two aa shorter than isoform 1. Variants 8 and 9 encode the same protein (isoform 2).
    Source sequence(s)
    AC114402
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:685 → 771
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  8. NM_001350266.2 → NP_001337195.1  zinc finger CCCH domain-containing protein 11A isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) differs in the 5' UTR and uses an alternate in-frame splice site in the 3' coding region. The encoded isoform (2) has the same N- and C-termini, but is two aa shorter than isoform 1. Variants 8 and 9 encode the same protein (isoform 2).
    Source sequence(s)
    AC114402
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:685 → 771
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  9. NM_001376334.1 → NP_001363263.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  10. NM_001376335.1 → NP_001363264.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  11. NM_001376336.1 → NP_001363265.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Related
    ENST00000640465.1
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  12. NM_001376337.1 → NP_001363266.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  13. NM_001376338.1 → NP_001363267.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  14. NM_001376339.1 → NP_001363268.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  15. NM_001376340.1 → NP_001363269.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  16. NM_001376341.1 → NP_001363270.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  17. NM_001376342.1 → NP_001363271.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Related
    ENSP00000356179.1, ENST00000367210.3
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  18. NM_001376343.1 → NP_001363272.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  19. NM_001376344.1 → NP_001363273.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  20. NM_001376345.1 → NP_001363274.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  21. NM_001376346.1 → NP_001363275.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  22. NM_001376347.1 → NP_001363276.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  23. NM_001376348.1 → NP_001363277.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  24. NM_001376349.1 → NP_001363278.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  25. NM_001376350.1 → NP_001363279.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  26. NM_001376351.1 → NP_001363280.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  27. NM_001376352.1 → NP_001363281.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  28. NM_001376353.1 → NP_001363282.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  29. NM_001376354.1 → NP_001363283.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  30. NM_001376355.1 → NP_001363284.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  31. NM_001376356.1 → NP_001363285.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  32. NM_001376357.1 → NP_001363286.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  33. NM_001376358.1 → NP_001363287.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  34. NM_001376359.1 → NP_001363288.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  35. NM_001376360.1 → NP_001363289.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Related
    ENSP00000491830.1, ENST00000639812.1
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  36. NM_001376361.1 → NP_001363290.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  37. NM_001376362.1 → NP_001363291.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  38. NM_001376363.1 → NP_001363292.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  39. NM_001376364.1 → NP_001363293.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  40. NM_001376365.1 → NP_001363294.1  zinc finger CCCH domain-containing protein 11A isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  41. NM_001376366.1 → NP_001363295.1  zinc finger CCCH domain-containing protein 11A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC114402
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:685 → 771
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  42. NM_001376367.1 → NP_001363296.1  zinc finger CCCH domain-containing protein 11A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC114402
    UniProtKB/TrEMBL
    B4DLG2
    Conserved Domains (2) summary
    pfam12287
    Location:685 → 771
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  43. NM_014827.6 → NP_055642.3  zinc finger CCCH domain-containing protein 11A isoform 1

    See identical proteins and their annotated locations for NP_055642.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1-7 encode the same protein (isoform 1).
    Source sequence(s)
    AC114402
    Consensus CDS
    CCDS30978.1
    UniProtKB/Swiss-Prot
    O75152, Q6AHY4, Q6AHY9, Q6AW79, Q6AWA1, Q6PJK4, Q86XZ7
    UniProtKB/TrEMBL
    B4DLG2
    Related
    ENSP00000356181.3, ENST00000367212.7
    Conserved Domains (2) summary
    pfam12287
    Location:687 → 773
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    203795623..203854124
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    203058813..203118077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O75152.3 GenPept UniProtKB/Swiss-Prot:O75152

Gene LinkOut

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