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RAB11FIP3 RAB11 family interacting protein 3 [ Homo sapiens (human) ]

Gene ID: 9727, updated on 2-Nov-2024

Summary

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Official Symbol
RAB11FIP3provided by HGNC
Official Full Name
RAB11 family interacting protein 3provided by HGNC
Primary source
HGNC:HGNC:17224
See related
Ensembl:ENSG00000090565 MIM:608738; AllianceGenome:HGNC:17224
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FIP3; CART1; FIP3-Rab11; Rab11-FIP3
Summary
Proteins of the large Rab GTPase family (see RAB1A; MIM 179508) have regulatory roles in the formation, targeting, and fusion of intracellular transport vesicles. RAB11FIP3 is one of many proteins that interact with and regulate Rab GTPases (Hales et al., 2001 [PubMed 11495908]).[supplied by OMIM, Mar 2008]
Expression
Broad expression in kidney (RPKM 33.4), brain (RPKM 8.0) and 25 other tissues See more
Orthologs
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Genomic context

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See RAB11FIP3 in Genome Data Viewer
Location:
16p13.3
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (425649..523011)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (421839..526088)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (475649..573011)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10204 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6917 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6918 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:449109-449694 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:450865-451450 Neighboring gene NME/NM23 nucleoside diphosphate kinase 4 Neighboring gene 2,4-dienoyl-CoA reductase 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:492123-492661 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:495322-495822 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:495823-496323 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:516240-516869 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:516870-517498 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:532003-532508 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:534533-535038 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:535039-535544 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:537093-537971 Neighboring gene uncharacterized LOC107987417 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:542303-542924 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:544383-544961 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:544962-545539 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:576271-576832 Neighboring gene long intergenic non-protein coding RNA 235 Neighboring gene calpain 15 Neighboring gene microRNA 5587

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Rab11-FIP3 localises to a Rab11-positive pericentrosomal compartment during interphase and to the cleavage furrow during cytokinesis. Horgan CP, et al. Biochem Biophys Res Commun, 2004 Jun 18. PMID 15158446
  2. Rab11-FIP3 is critical for the structural integrity of the endosomal recycling compartment. Horgan CP, et al. Traffic, 2007 Apr. PMID 17394487
  3. Molecular characterization of Rab11-FIP3 binding to ARF GTPases. Schonteich E, et al. Eur J Cell Biol, 2007 Aug. PMID 17628206
  4. Rab11-FIP3 binds dynein light intermediate chain 2 and its overexpression fragments the Golgi complex. Horgan CP, et al. Biochem Biophys Res Commun, 2010 Apr 2. PMID 20214888
  5. Structural basis for Rab11-mediated recruitment of FIP3 to recycling endosomes. Eathiraj S, et al. J Mol Biol, 2006 Nov 24. PMID 17007872

See all (51) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. IKZF4/NONO-RAB11FIP3 axis promotes immune evasion in gastric cancer via facilitating PD-L1 endosome recycling.
    Title: IKZF4/NONO-RAB11FIP3 axis promotes immune evasion in gastric cancer via facilitating PD-L1 endosome recycling.
  2. Rac1-Rab11-FIP3 regulatory hub coordinates vesicle traffic with actin remodeling and T-cell activation
    Title: Rac1-Rab11-FIP3 regulatory hub coordinates vesicle traffic with actin remodeling and T-cell activation.
  3. RAB11FIP3 combines with Eps15 homology domain 1 to promote the endocytosis recycling of phosphorylation of epithelial growth factor receptor.
    Title: Increased Eps15 homology domain 1 and RAB11FIP3 expression regulate breast cancer progression via promoting epithelial growth factor receptor recycling.
  4. Rab11-FIP3 coordinates the interactions of ASAP1 and Rab11a with Rabin8.
    Title: The Arf and Rab11 effector FIP3 acts synergistically with ASAP1 to direct Rabin8 in ciliary receptor targeting.
  5. CART1 might be a cytoplasmic, testis-specific derepressor of RAR
    Title: A novel cytoplasmic adaptor for retinoic acid receptor (RAR) and thyroid receptor functions as a Derepressor of RAR in the absence of retinoic acid.
  6. FIP3 was identified as the first membrane-associated interacting-partner for DLIC-2.
    Title: Rab11-FIP3 binds dynein light intermediate chain 2 and its overexpression fragments the Golgi complex.
  7. Rab11-FIP3 is a Rab11-binding protein that regulates breast cancer cell motility by modulating the actin cytoskeleton.(325-41)
    Title: Rab11-FIP3 is a Rab11-binding protein that regulates breast cancer cell motility by modulating the actin cytoskeleton.
  8. Necessary for the structural integrity of the pericentrosomal endosomal recycling compartment.
    Title: Rab11-FIP3 is critical for the structural integrity of the endosomal recycling compartment.
  9. FIP3 is a scaffolding protein that, in addition to regulating endosome targeting to the cleavage furrow, also is required for Arf6 recruitment to the midbody during late telophase.
    Title: Molecular characterization of Rab11-FIP3 binding to ARF GTPases.
  10. FIP-3 and RAB11 protein complex regulates recycling endosomes targeting to the cleavage furrow during late cytokinesis.
    Title: The FIP3-Rab11 protein complex regulates recycling endosome targeting to the cleavage furrow during late cytokinesis.
Submit: New GeneRIF Correction See all GeneRIFs (12)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • KIAA0665, PAC196A12.1, MU-MB-17.148

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables dynein light intermediate chain binding IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables dynein light intermediate chain binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables molecular adaptor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables molecular adaptor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein-containing complex binding IEA
Inferred from Electronic Annotation
more info
  
enables protein-macromolecule adaptor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein-macromolecule adaptor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables small GTPase binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables small GTPase binding IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables small GTPase binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables small GTPase binding NAS
Non-traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi to plasma membrane protein transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cell division IEA
Inferred from Electronic Annotation
more info
  
involved_in early endosome to recycling endosome transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in endocytic recycling IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in endocytic recycling IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in negative regulation of adiponectin secretion IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of cilium assembly IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of cilium assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of mitotic cytokinetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in protein localization to cilium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein localization to cleavage furrow IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of cilium assembly IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of cilium assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of cytokinesis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of cytokinesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of early endosome to recycling endosome transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of endocytic recycling IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of protein localization to centrosome IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of vesicle-mediated transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in vesicle-mediated transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in vesicle-mediated transport TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in centriolar satellite IDA
Inferred from Direct Assay
more info
  
located_in centrosome IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cleavage furrow IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cleavage furrow IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
  
is_active_in endocytic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endocytic vesicle membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in intercellular bridge IDA
Inferred from Direct Assay
more info
  
located_in intracellular membrane-bounded organelle IDA
Inferred from Direct Assay
more info
  
is_active_in midbody IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in midbody IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
  
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
  
located_in postsynaptic recycling endosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in recycling endosome IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in recycling endosome membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in trans-Golgi network membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
rab11 family-interacting protein 3
Names
EF hands-containing Rab-interacting protein
MU-MB-17.148
RAB11 family interacting protein 3 (class II)
arfophilin-1
cytoplasmic adaptor for RAR and TR
eferin
NP_001135744.2
NP_001357330.1
NP_055515.1
XP_005255771.1
XP_005255772.1
XP_005255774.1
XP_005255775.1
XP_011521066.1
XP_011521067.1
XP_016879396.1
XP_047290915.1
XP_047290916.1
XP_054170469.1
XP_054170470.1
XP_054170471.1
XP_054170472.1
XP_054170473.1
XP_054170474.1
XP_054185167.1
XP_054185168.1
XP_054185169.1
XP_054185170.1
XP_054185171.1

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142272.2 → NP_001135744.2  rab11 family-interacting protein 3 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
    Source sequence(s)
    AL049542, Z98882
    Related
    ENSP00000415919.1, ENST00000450428.5
    Conserved Domains (2) summary
    TIGR02168
    Location:160 → 432
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam09457
    Location:406 → 446
    RBD-FIP; FIP domain

  2. NM_001370401.1 → NP_001357330.1  rab11 family-interacting protein 3 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL023881, AL049542, Z98882
    Consensus CDS
    CCDS92071.1
    UniProtKB/TrEMBL
    A0A0J9YWV4, X6RFI8
    Related
    ENSP00000399644.2, ENST00000434585.6
    Conserved Domains (4) summary
    PRK07764
    Location:3 → 223
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    TIGR02168
    Location:515 → 787
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam09457
    Location:761 → 801
    RBD-FIP; FIP domain
    pfam13499
    Location:206 → 264
    EF-hand_7; EF-hand domain pair

  3. NM_014700.4 → NP_055515.1  rab11 family-interacting protein 3 isoform 1

    See identical proteins and their annotated locations for NP_055515.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AL023881, BC051360, Z98882
    Consensus CDS
    CCDS32351.1
    UniProtKB/Swiss-Prot
    B0QYI8, B0QYT8, B1AHQ0, B4DEI7, B4DZR6, O75154, Q4VXV7, Q7Z5E9, Q9H155, Q9H1G0, Q9NUI0
    UniProtKB/TrEMBL
    A0A0J9YWV4, X6RFI8
    Related
    ENSP00000262305.4, ENST00000262305.9
    Conserved Domains (8) summary
    COG1842
    Location:459 → 674
    PspA; Phage shock protein A [Transcription, Signal transduction mechanisms]
    pfam09457
    Location:716 → 756
    RBD-FIP; FIP domain
    pfam05700
    Location:486 → 589
    BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
    pfam11262
    Location:540 → 631
    Tho2; Transcription factor/nuclear export subunit protein 2
    pfam13499
    Location:207 → 263
    EF-hand_7; EF-hand domain pair
    pfam15068
    Location:80 → 140
    FAM101; FAM101 family
    pfam16034
    Location:577 → 691
    JAKMIP_CC3; JAKMIP CC3 domain
    cl08302
    Location:206 → 264
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    425649..523011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017023907.2 → XP_016879396.1  rab11 family-interacting protein 3 isoform X1

  2. XM_005255717.4 → XP_005255774.1  rab11 family-interacting protein 3 isoform X4

    See identical proteins and their annotated locations for XP_005255774.1

    Conserved Domains (3) summary
    cd00051
    Location:206 → 264
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:207 → 263
    EF-hand_7; EF-hand domain pair
    pfam16214
    Location:85 → 220
    AC_N; Adenylyl cyclase N-terminal extracellular and transmembrane region

  3. XM_005255718.4 → XP_005255775.1  rab11 family-interacting protein 3 isoform X6

    See identical proteins and their annotated locations for XP_005255775.1

    Conserved Domains (3) summary
    cd00051
    Location:206 → 264
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:207 → 263
    EF-hand_7; EF-hand domain pair
    pfam16214
    Location:85 → 220
    AC_N; Adenylyl cyclase N-terminal extracellular and transmembrane region

  4. XM_047434960.1 → XP_047290916.1  rab11 family-interacting protein 3 isoform X7

  5. XM_011522765.3 → XP_011521067.1  rab11 family-interacting protein 3 isoform X5

    See identical proteins and their annotated locations for XP_011521067.1

    Conserved Domains (4) summary
    COG1842
    Location:162 → 377
    PspA; Phage shock protein A [Transcription, Signal transduction mechanisms]
    pfam09457
    Location:419 → 459
    RBD-FIP; FIP domain
    pfam05700
    Location:189 → 292
    BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
    pfam11262
    Location:243 → 334
    Tho2; Transcription factor/nuclear export subunit protein 2

  6. XM_011522764.3 → XP_011521066.1  rab11 family-interacting protein 3 isoform X3

    See identical proteins and their annotated locations for XP_011521066.1

    UniProtKB/Swiss-Prot
    O75154
    Conserved Domains (2) summary
    TIGR02168
    Location:205 → 477
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam09457
    Location:451 → 491
    RBD-FIP; FIP domain

  7. XM_005255715.6 → XP_005255772.1  rab11 family-interacting protein 3 isoform X3

    See identical proteins and their annotated locations for XP_005255772.1

    UniProtKB/Swiss-Prot
    O75154
    Conserved Domains (2) summary
    TIGR02168
    Location:205 → 477
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam09457
    Location:451 → 491
    RBD-FIP; FIP domain

  8. XM_047434959.1 → XP_047290915.1  rab11 family-interacting protein 3 isoform X3

  9. XM_005255714.2 → XP_005255771.1  rab11 family-interacting protein 3 isoform X2

    See identical proteins and their annotated locations for XP_005255771.1

    Conserved Domains (5) summary
    COG1842
    Location:208 → 423
    PspA; Phage shock protein A [Transcription, Signal transduction mechanisms]
    pfam09457
    Location:465 → 505
    RBD-FIP; FIP domain
    pfam05700
    Location:235 → 338
    BCAS2; Breast carcinoma amplified sequence 2 (BCAS2)
    pfam11262
    Location:289 → 380
    Tho2; Transcription factor/nuclear export subunit protein 2
    pfam16034
    Location:326 → 440
    JAKMIP_CC3; JAKMIP CC3 domain

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187610.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    24795..125679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054329195.1 → XP_054185170.1  rab11 family-interacting protein 3 isoform X4

  2. XM_054329196.1 → XP_054185171.1  rab11 family-interacting protein 3 isoform X6

  3. XM_054329193.1 → XP_054185168.1  rab11 family-interacting protein 3 isoform X3

  4. XM_054329194.1 → XP_054185169.1  rab11 family-interacting protein 3 isoform X3

  5. XM_054329192.1 → XP_054185167.1  rab11 family-interacting protein 3 isoform X2

RNA

  1. XR_008485623.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    421839..526088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054314494.1 → XP_054170469.1  rab11 family-interacting protein 3 isoform X1

  2. XM_054314498.1 → XP_054170473.1  rab11 family-interacting protein 3 isoform X4

  3. XM_054314499.1 → XP_054170474.1  rab11 family-interacting protein 3 isoform X6

  4. XM_054314496.1 → XP_054170471.1  rab11 family-interacting protein 3 isoform X3

  5. XM_054314497.1 → XP_054170472.1  rab11 family-interacting protein 3 isoform X3

  6. XM_054314495.1 → XP_054170470.1  rab11 family-interacting protein 3 isoform X2

RNA

  1. XR_008484754.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O75154.1 GenPept UniProtKB/Swiss-Prot:O75154

Gene LinkOut

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