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LOC9659400 bZIP transcription factor 46 [ Selaginella moellendorffii ]

Gene ID: 9659400, updated on 22-Oct-2023

Summary

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Gene symbol
LOC9659400
Gene description
bZIP transcription factor 46
Locus tag
SELMODRAFT_266892
Gene type
protein coding
RefSeq status
MODEL
Organism
Selaginella moellendorffii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
Also known as
ABI5C-1
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Genomic context

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See LOC9659400 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314266.1 (3556927..3559366)

NW_003314266.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112344652 Neighboring gene peroxygenase 2 Neighboring gene germin-like protein 1-1 Neighboring gene pentatricopeptide repeat-containing protein At2g13600-like Neighboring gene dual specificity protein phosphatase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003314266 Unplaced Scaffold Reference v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bZIP transcription factor 46

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0

Genomic

  1. NW_003314266.1 Reference v1.0

    Range
    3556927..3559366
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024669833.1 → XP_024525601.1  bZIP transcription factor 46 isoform X1

    UniProtKB/TrEMBL
    D8R121
    Conserved Domains (2) summary
    cd14707
    Location:382 → 436
    bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain
    cl25742
    Location:332 → 455
    ERM; Ezrin/radixin/moesin family

  2. XM_024669835.1 → XP_024525603.1  bZIP transcription factor 46 isoform X3

    UniProtKB/TrEMBL
    D8R121
    Conserved Domains (1) summary
    cd14707
    Location:382 → 436
    bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain

  3. XM_024669834.1 → XP_024525602.1  bZIP transcription factor 46 isoform X2

    UniProtKB/TrEMBL
    D8R121
    Conserved Domains (1) summary
    cd14707
    Location:382 → 436
    bZIP_plant_BZIP46; Basic leucine zipper (bZIP) domain of uncharaterized Plant BZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
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