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LOC9642368 protein SHORT-ROOT [ Selaginella moellendorffii ]

Gene ID: 9642368, updated on 22-Oct-2023

Summary

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Gene symbol
LOC9642368
Gene description
protein SHORT-ROOT
Locus tag
SELMODRAFT_450140
Gene type
protein coding
RefSeq status
MODEL
Organism
Selaginella moellendorffii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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Genomic context

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See LOC9642368 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314283.1 (1341260..1342599, complement)

NW_003314283.1Genomic Context describing neighboring genes Neighboring gene THO complex subunit 2 Neighboring gene cytoplasmic tRNA 2-thiolation protein 2 Neighboring gene ADP-ribosylation factor-like protein 8a Neighboring gene pentatricopeptide repeat-containing protein At2g13600-like Neighboring gene uncharacterized LOC9642369

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003314283 Unplaced Scaffold Reference v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SHORT-ROOT
Names
GRAS family protein
SHORTROOT_2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0

Genomic

  1. NW_003314283.1 Reference v1.0

    Range
    1341260..1342599 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002973701.2 → XP_002973747.1  protein SHORT-ROOT

    See identical proteins and their annotated locations for XP_002973747.1

    UniProtKB/TrEMBL
    D8RRI6
    Conserved Domains (1) summary
    pfam03514
    Location:58 → 435
    GRAS; GRAS domain family
Nucleotide Protein
Heading Accession and Version

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