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LOC9637097 B-box zinc finger protein 18 [ Selaginella moellendorffii ]

Gene ID: 9637097, updated on 22-Oct-2023

Summary

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Gene symbol
LOC9637097
Gene description
B-box zinc finger protein 18
Locus tag
SELMODRAFT_127857
Gene type
protein coding
RefSeq status
MODEL
Organism
Selaginella moellendorffii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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Genomic context

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See LOC9637097 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314349.1 (449629..450860, complement)

NW_003314349.1Genomic Context describing neighboring genes Neighboring gene rRNA 2'-O-methyltransferase fibrillarin-like Neighboring gene phospholipase D delta Neighboring gene uncharacterized LOC112341647 Neighboring gene uncharacterized LOC9637588 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP19-4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003314349 Unplaced Scaffold Reference v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in photomorphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B-box zinc finger protein 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0

Genomic

  1. NW_003314349.1 Reference v1.0

    Range
    449629..450860 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002988412.2 → XP_002988458.2  B-box zinc finger protein 18 isoform X4

    Conserved Domains (2) summary
    smart00336
    Location:51 → 96
    BBOX; B-Box-type zinc finger
    cd00021
    Location:3 → 47
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

  2. XM_024662167.1 → XP_024517935.1  B-box zinc finger protein 18 isoform X4

    Conserved Domains (2) summary
    smart00336
    Location:51 → 96
    BBOX; B-Box-type zinc finger
    cd00021
    Location:3 → 47
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

  3. XM_024662166.1 → XP_024517934.1  B-box zinc finger protein 18 isoform X3

    Conserved Domains (2) summary
    smart00336
    Location:51 → 96
    BBOX; B-Box-type zinc finger
    cd00021
    Location:3 → 47
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

  4. XM_024662164.1 → XP_024517932.1  B-box zinc finger protein 18 isoform X1

    Conserved Domains (2) summary
    smart00336
    Location:77 → 122
    BBOX; B-Box-type zinc finger
    cd00021
    Location:3 → 32
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

  5. XM_024662165.1 → XP_024517933.1  B-box zinc finger protein 18 isoform X2

    Conserved Domains (2) summary
    smart00336
    Location:77 → 122
    BBOX; B-Box-type zinc finger
    cd00021
    Location:3 → 32
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Nucleotide Protein
Heading Accession and Version

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