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alsB D-allose ABC transporter periplasmic binding protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948604, updated on 10-Oct-2024

Summary

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Official Symbol
alsB
Official Full Name
D-allose ABC transporter periplasmic binding protein
Primary source
ECOCYC:EG12458
Locus tag
b4088
See related
ASAP:ABE-0013398
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4081; yjcX
Summary
First 23 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG12458]. AlsB is the periplasmic substrate-binding component of the allose ABC transporter. [More information is available at EcoCyc: EG12458].
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Genomic context

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Sequence:
NC_000913.3 (4311107..4312042, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene D-allose kinase Neighboring gene D-allulose-6-phosphate 3-epimerase Neighboring gene D-allose ABC transporter membrane subunit Neighboring gene D-allose ABC transporter ATP binding subunit Neighboring gene DNA-binding transcriptional repressor AlsR Neighboring gene allose-6-phosphate isomerase/ribose-5-phosphate isomerase B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables monosaccharide binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within D-allose transmembrane transport EXP
Inferred from Experiment
more info
 PubMed 
involved_in D-allose transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in D-ribose transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane HDA PubMed 
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
located_in outer membrane-bounded periplasmic space IDA
Inferred from Direct Assay
more info
 PubMed 
located_in outer membrane-bounded periplasmic space IEA
Inferred from Electronic Annotation
more info
  
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
D-allose ABC transporter periplasmic binding protein
NP_418512.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4311107..4312042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418512.1 D-allose ABC transporter periplasmic binding protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418512.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6L9A9V5
    Conserved Domains (1) summary
    PRK09701
    Location:1 → 311
    PRK09701; D-allose transporter substrate-binding protein
Nucleotide Protein
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